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does anyone here understand what the results of the rare snp utility of gedmatch mean?


By katy_brecht_quesada - Posted on 12 June 2014

i tried out that tool and put the setting on 25 chromosomes showing both heterozygous and homozygous results. that results were kind of confusing. here's the copy/paste of the results. can anyone make sense of these results?

RSID Chr Position (B36) Genotype %Occurrence Gene Matching Origins
rs10088365 8 10134808 Ag 0.017507 MSRA
rs2240801 17 46105801 Ag 0.0439136 ABCC3
rs829062 12 21845568 gT 0.0525578 ABCC9
rs1069915 12 21813381 aC 0.0701262 KCNJ8
rs8177743 10 6035056 cT 0.0875503 IL15RA Eritrea
rs35335722 12 10202159 aG 0.113995
rs11568365 2 169560131 GG 0.123444 SPC25
rs12570091 10 128159445 Ag 0.137011 C10orf90
rs12435710 14 57808196 Ct 0.140723 PSMA3 Guatemala
Mayan
Mexico
New Mexico, USA
rs17837645 7 155705267 Ag 0.145615 Croatia
rs8105775 19 4459945 Ag 0.145647 KIAA1881
rs267034 5 117010501 aC 0.16672 Colombia
East Asian
rs12595405 15 79807815 cT 0.17784 Mexico
rs3739806 9 86681441 Ct 0.178494 Switzerland
rs2299900 7 139328532 cT 0.204786 JHDM1D Guatemala
rs3756787 6 131999548 aG 0.209723 Ecuador
El Salvador
Ireland
Norway
rs2297632 1 94289754 CC 0.220193 ABCA4 East Asian
Norway
rs10743868 12 10113019 cT 0.221072 France
Poland
rs28364601 2 10502815 Ag 0.23511 HPCAL1 Guatemala
Mayan
Mexico
rs1575033 7 143505793 Ct 0.253752 ARHGEF5 Guatemala
rs12494041 3 115039120 aG 0.262904 Iran
rs12675844 8 137159846 Ag 0.268904 Guatemala
Mayan
rs12492542 3 114850862 Ct 0.2734 KIAA2018 Colombia
Iran
Mexico
rs4147824 1 94333563 CC 0.278009
rs433032 3 13368384 GG 0.278087 NUP210